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- calculate_and_fit_fcs_traces_with_the_fcs_script
- lifetime_fitting_using_the_flim_analysis
- lifetime_fitting_using_the_tcpsc_fitting_script
- lifetime-fitting_using_the_flim_script
- lifetime-fitting_using_the_rapid_reconvolution_algorithm
- reconvolution_fit (howto)
- roi_fitting_using_the_flim_script
- flimfit (software)
- fluofit (software)
- pycorrfit (software)
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- lifetime-fitting_using_the_flim_script @howto
- can be used to perform a pixel-by-pixel lifetime fit of a FLIM image and how to extract and read the r... ited fitting model is chosen and a pixel-by-pixel fit is performed. ===== Step-by-step Tutorial ====... lly want to have in a pixel in order to perform a fit. If there are too few photons in a pixel, a decent fit result cannot be expected. It is also possible to
- calculate_and_fit_fcs_traces_with_the_fcs_script @howto
- is SymPhoTime}} ~~NOTOC~~ ====== Calculate and Fit FCS Traces with the FCS Script ====== ===== Summ... e left side of the main window. {{ calculate_and_fit_fcs_traces_with_the_fcs_script_Image_1.png }} ... .ptu'' by a single mouse click. {{ calculate_and_fit_fcs_traces_with_the_fcs_script_Image_2.png }} ... , open the dropdown menu "FCS". {{ calculate_and_fit_fcs_traces_with_the_fcs_script_Image_3.png }} **
- visualizing_dynamics_using_the_multiframe-flim_script @howto
- nning_2.png |}} ==== Perform an Initial Lifetime Fit on the Selected Regions (ROIs) ==== * In the ... rop-down list select "n-Exponential Reconvolution Fit".\\ {{ howto:nexpon_fitmodel.png?300 |}} ** Res... *Note:**\\ The software offers the possibility to fit the data using a n-exponential tail fit, n-exponential reconvolution or rapid reconvolution fit. A tai
- lifetime_fitting_using_the_flim_analysis @howto
- f SymPhoTime 64 can be used to perform a lifetime fit and how to extract and read the results. In detai... ited fitting model is chosen and a pixel-by-pixel fit is performed. {{ youtube>bKzQ74_bvK4?large }} =... the fitting model to "n-Exponential Reconvolution Fit". {{ lifetime-fitting_using_the_flim-script_Image... *Note:**\\ The software offers the possibility to fit the data using a n-exponential tailfit or a n-exp
- roi_fitting_using_the_flim_script @howto
- ducts:SymPhoTime64|SymPhoTime 64]] can be used to fit several regions of interest (ROIs), and how to ex... ution of the raw image. ==== Perform a Lifetime Fit on the Selected Regions (ROIs) ==== * In the d... **Note:** The software offers the possibility to fit the data using a n-exponential tailfit or a n-exponential reconvolution fit. A tailfit can be used whe
- update @howto
- w the FLIM script of SymPhoTime 64 can be used to fit several regions of interest (ROIs), and how to ex... ited fitting model is chosen and a pixel-by-pixel fit is performed.\\ ===== Step-by-step Tutorial ===... orresponding to ''ROI 0'' will appear under decay fit in "Decay Fitting" panel.\\ **Note:**\\ For fin... n the list. ==== Perform an Initial Lifetime Fit on the Selected Regions (ROIs) ==== * In the
- pattern_matching @howto
- ans, that probably two patterns are sufficient to fit the image. **Note:** Have a look at the //Decay ... and binding (not shown). ==== Perform a Pattern Fit ==== **Note:** The desired patterns are already ... itting.\\ It is recommended to perform an initial fit before starting the Pattern Fit. This is because some parameters of the initial fit will be used in th
- flim_fret_calculation_for_multi_exponential_donors @howto
- cted with the donor construct by performing a ROI-fit with the FLIM-analysis. The amplitude weighted av... y lifetime and also to perform the pixel-by-pixel fit to calculate the FRET efficiency. ===== Step-by-... itting model. {{ :howto:flim-fret-multiexpd_reconvfit.png?400 |}} **Response:**\\ * In the TCSPC w... ameter table. {{ :howto:flim-fret-multiexpd_reconvfit_response.png |}} **Note:**\\ The software offers
- lifetime-fitting_using_the_rapid_reconvolution_algorithm @howto
- is of SymPhoTime 64 is used to perform a lifetime fit and how to extract and read the results. A mixtur... dow and an extra gray decay on bottom right under Fit. Lifetime histogram and the preview FLIM image re... th ROI 0 and only one component (monoexponential) fit. Press "Initial Fit" (marked in orange). {{ howto:monoexpo_roi0.png |}} **Response:**\\ A single ex
- software
- hub.com/PicoQuant/EasyTau-Scripts [[software:FluoFit]] \\ Decay curve analysis software ===== Open Sou... e-Molecule Spectroscopy]] * [[software:PyCorrFit]] is a general-purpose FCS evaluation software t... ablished Zeiss ConfoCor3 ~.fcs file format. PyCorrFit comes with several built-in model functions, cove... g (DLS). * [[http://www.dkfz.de/Macromol/quickfit|QuickFit 3.0]]: QuickFit 3 is our open-source dat
- lifetime_fitting_using_the_tcpsc_fitting_script @howto
- ===== This tutorial shows step-by-step, how to fit a selected model to a decay curve in order to get... As an example, a single exponential reconvolution fit is used to determine the lifetime of ATTO655 dilu... offers the possibility to use a n-exponential tailfit or a n-exponential reconvolution model fit. A tailfit can be used when the expected lifetimes are sign
- separation_of_2_species_with @howto
- nce lifetime under certain conditions, a lifetime fit can be performed of the TCPSC histogram of the me... cies_with_Image_16.png?600 }} * Press "Initial FIT" to fit these patterns to the decay of the FCS measurement. {{ separation_of_2_species_with_Image_17.p... 1 indicates that no further pattern is needed to fit the data. * Three FLCS filters are generated,
- pycorrfit @software
- software analysis open_source FCS}} ====== PyCorrFit: data analysis software for fluorescence correlation spectroscopy (FCS) ====== "[...] PyCorrFit is a general-purpose FCS evaluation software that... ablished Zeiss ConfoCor3 ~.fcs file format. PyCorrFit comes with several built-in model functions, cove... total internal reflection (TIR)." [[http://pycorrfit.craban.de/]] GitHub:[[https://github.com/paulmue
- flim-fret_calculation_for_single_exponential_donors @howto
- ertain regions of the cytoplasm. A bi-exponential fit is performed in a larger region of interest to de... sence of [[glossary:fret|FRET]]. A pixel-by-pixel fit is performed in the image and in every pixel the ... 1expd_fittingmodel.png?400 |}} * Click "Initial Fit" below the fitting parameter. **Response:** The fit is performed to the ROI decay. {{ :howto:flim-fre
- reconvolution_fit @howto
- ===== Reconvolution fit ===== Select an ''.etc'' container that contains at least one IRF histogram an... d. The default fitting option is "Exponential Tailfit". In order to perform a reconvolution fit, we need to select and then assign a curve as an IRF and the... th IRF and decay curve time ranges. Pressing the "Fit Single" button performs a fully automated fit of