| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision |
| software [2019/04/04 17:40] – admin | software [2021/02/09 12:20] – [Data Analysis] admin |
|---|
| {{tag> software acquisition analysis}} | {{tag> software acquisition analysis}} |
| | |
| ~~TOC~~ | ~~TOC~~ |
| | |
| ====== Software ====== | ====== Software ====== |
| |
| * [[https://timetag.github.io|Extensible Time-tag Analyzer]]. ETA, the extensible time tag analyzer, is an event driven programming language with graphical user interface for analyzing, plotting, and fitting of time tagged data.[[https://eta.readthedocs.io/en/latest/intro.html|More info.]] | * [[https://timetag.github.io|Extensible Time-tag Analyzer]]. ETA, the extensible time tag analyzer, is an event driven programming language with graphical user interface for analyzing, plotting, and fitting of time tagged data.[[https://eta.readthedocs.io/en/latest/intro.html|More info.]] |
| |
| * [[https://pals3d.readthedocs.io/en/latest/|Pals3D]] is a graphical application to support the use of a Time-Correlated Single Photon Counting system for application to Positron Annihilation Lifetime Spectroscopy. [[https://github.com/avancra/Pals3D]] | * [[https://pals3d.readthedocs.io/en/latest/|Pals3D]] is a graphical application to support the use of a Time-Correlated Single Photon Counting system for application to Positron Annihilation Lifetime Spectroscopy. [[https://github.com/avancra/Pals3D]]. |
| | |
| | * [[https://github.com/SarthakJariwala/Python_GUI_apps]] |
| | Graphical User Interface (GUI) Python apps written in python using qt and pyqtgrpah for quick analysis of scientific data. It also includes the ability to convert data to H5 if needed. |
| |
| * [[https://github.com/slim-curve]] An exponential curve fitting library used for Fluorescent Lifetime Imaging (FLIM) and Spectral Lifetime Imaging (SLIM). | |
| |
| === Libraries/scripts/readers === | === Libraries/scripts/readers === |
| * Import Filter for pt3 files: [[http://imagejdocu.tudor.lu/doku.php?id=plugin:inputoutput:picoquant_.pt3_image_reader:start]] | * Import Filter for pt3 files: [[http://imagejdocu.tudor.lu/doku.php?id=plugin:inputoutput:picoquant_.pt3_image_reader:start]] |
| * Import of ptu/pt3 image files (+intensity/average lifetime stacks): [[https://github.com/ekatrukha/PTU_Reader]] | * Import of ptu/pt3 image files (+intensity/average lifetime stacks): [[https://github.com/ekatrukha/PTU_Reader]] |
| * [[https://github.com/qpl-public/readPTU|A Python library to read PTU files]] \\ From the authors: "The main purpose of the library is to compute g<sup>2</sup> from the photon arrival times as fast as possible, as our files often go into multi GB sizes. With a good SSD we can parse >3GB/s. It can also compute intensity time traces and post select photons based on that." | |
| |
| * [[https://github.com/QuantumPhotonicsLab/readPTU]] Probably same as above | |
| | * [[https://github.com/QuantumPhotonicsLab/readPTU]] readPTU: a Python Library to Analyse Time Tagged Time Resolved Data [[http://qpl.eps.hw.ac.uk/]], [[https://arxiv.org/pdf/1903.07112.pdf]] |
| |
| * [[https://github.com/trevhull/ptuT3toT2|ptuT3toT2 - a program that converts ptu files from picoquant from T3 mode to T2 mode]] | * [[https://github.com/trevhull/ptuT3toT2|ptuT3toT2 - a program that converts ptu files from picoquant from T3 mode to T2 mode]] |
| |
| * [[https://github.com/skyjur/picoharp300-curvefit-ui|TCSPC curve fitting for phd files (Python)]] | * [[https://github.com/skyjur/picoharp300-curvefit-ui|TCSPC curve fitting for phd files (Python)]] |
| | |
| | * [[ https://github.com/SumeetRohilla/readPTU_FLIM | readPTU_FLIM]] Library for reading PTU files (works for MultiHarp, HydraHarp, PicoHarp, TimeHarp acquisition) as well as converting raw TTTR data to FLIM image data stack. |
| | |
| | * [[https://tpeulen.github.io/tttrlib/| tttrlib]] tttrlib is a low level, high performance API to read and process time-tagged-time resolved (TTTR) data |
| ==== Data Acquisition ==== | ==== Data Acquisition ==== |
| |
| * **pyPL**: wxpython integration of software and hardware for micro-photoluminescence measurements: WinSpec, PicoHarp, and Thorlabs/APT piezos and stepper motors. \\ https://github.com/kaseyrussell/pyPL | * **pyPL**: wxpython integration of software and hardware for micro-photoluminescence measurements: WinSpec, PicoHarp, and Thorlabs/APT piezos and stepper motors. \\ https://github.com/kaseyrussell/pyPL |
| * PicoHarp Multiscan with Prior Stage: [[https://bitbucket.org/ywsong2/uky_ptu_convert]] | * PicoHarp Multiscan with Prior Stage: [[https://bitbucket.org/ywsong2/uky_ptu_convert]] |
| | * **Python** interface to communicate with TimeHarp 260: [[https://github.com/impact27/th260]] |
| | * LabView based **Fluorescence lifetime activated droplet sorting** software[[https://github.com/SadatHasan/EasyFlux]] |
| | * [[https://github.com/scopefoundry/]] A Python platform for controlling custom laboratory experiments and visualizing scientific data |
| |
| === Demos about Controlling PicoQuant Devices === | === Demos about Controlling PicoQuant Devices === |
| * https://github.com/PicoQuant/HH400-v1.x-Demos | * https://github.com/PicoQuant/HH400-v1.x-Demos |
| * https://github.com/PicoQuant/HH400-v3.x-Demos | * https://github.com/PicoQuant/HH400-v3.x-Demos |
| | |
| | == MultiHarp 150 == |
| | * [[https://github.com/PicoQuant/MH150-Demos]] |
| |
| === Other === | === Other === |
