Differences

This shows you the differences between two versions of the page.

--- software [2019/05/14 08:13] – admin
+++ software [2021/06/11 08:21] – buschmann
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 {{tag> software acquisition analysis}}
 ~~TOC~~
 ====== Software ======
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 === Complete packages ===
   * **PAM** is a software package for quantitative analysis of fluorescence microscopy and spectroscopy data, with a focus on experiments using pulsed interleaved excitation.[[http://pam.readthedocs.io|]]
-  * [[http://www.mpc.hhu.de/en/software/software-package.html|Software Package for Multiparameter Fluorescence Spectroscopy and Imaging by research group Seidel, HHU]]: A collection of independent sotftware packages which enable the user to perfrom the analysis workflow put forward by the group.Please note that a trial version is available.
+  * [[https://www.mpc.hhu.de/software/3-software-package-for-mfd-fcs-and-mfis|Software Package for Multiparameter Fluorescence Spectroscopy and Imaging by research group Seidel, HHU]]: A collection of independent sotftware packages which enable the user to perfrom the analysis workflow put forward by the group.Please note that a trial version is available.
   * **[[https://github.com/OpenSMFS|Open Tools for Solution-Based Single-Molecule Fluorescence Spectroscopy]]**
     * **FRETBursts**: software for burst analysis of freely-diffusing single-molecule FRET (smFRET) measurements including μs-ALEX.  [[http://tritemio.github.io/FRETBursts/|FRETBursts Homepage]] and [[http://dx.doi.org/10.1101/039198|paper]].
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   * [[https://timetag.github.io|Extensible Time-tag Analyzer]]. ETA, the extensible time tag analyzer, is an event driven programming language with graphical user interface for analyzing, plotting, and fitting of time tagged data.[[https://eta.readthedocs.io/en/latest/intro.html|More info.]]
-  * [[https://pals3d.readthedocs.io/en/latest/|Pals3D]] is a graphical application to support the use of a Time-Correlated Single Photon Counting system for application to Positron Annihilation Lifetime Spectroscopy. [[https://github.com/avancra/Pals3D]]
+  * [[https://pals3d.readthedocs.io/en/latest/|Pals3D]] is a graphical application to support the use of a Time-Correlated Single Photon Counting system for application to Positron Annihilation Lifetime Spectroscopy. [[https://github.com/avancra/Pals3D]].
+  * [[https://github.com/SarthakJariwala/Python_GUI_apps]]
+Graphical User Interface (GUI) Python apps written in python using qt and pyqtgrpah for quick analysis of scientific data. It also includes the ability to convert data to H5 if needed.
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-  * [[https://github.com/QuantumPhotonicsLab/readPTU]] readPTU: a Python Library to Analyse Time Tagged Time Resolved Data //
+  * [[https://github.com/QuantumPhotonicsLab/readPTU]] readPTU: a Python Library to Analyse Time Tagged Time Resolved Data [[http://qpl.eps.hw.ac.uk/]], [[https://arxiv.org/pdf/1903.07112.pdf]]
-  "readPTU is a python package designed to analyze time-correlated single-photon counting data. The use of the library promotes the storage of the complete time arrival information of the photons and full flexibility in post-processing data for analysis. The library supports the computation of time resolved signal with external triggers and second order autocorrelation function analysis can be performed using multiple algorithms that provide the user with different trade-offs with regards to speed and accuracy. Additionally, a thresholding algorithm to perform time post-selection is also available. The library has been designed with performance and extensibility in mind to allow future users to implement support for additional file extensions and algorithms without having to deal with low level details. We demonstrate the performance of readPTU by analyzing the second-order autocorrelation function of the resonance fluorescence from a single quantum dot in a two-dimensional semiconductor." [[http://qpl.eps.hw.ac.uk/]]
   * [[https://github.com/trevhull/ptuT3toT2|ptuT3toT2 - a program that converts ptu files from picoquant from T3 mode to T2 mode]]
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     * [[https://github.com/skyjur/picoharp300-curvefit-ui|TCSPC curve fitting for phd files (Python)]]
+    * [[ https://github.com/SumeetRohilla/readPTU_FLIM | readPTU_FLIM]] Library for reading PTU files (works for MultiHarp, HydraHarp, PicoHarp, TimeHarp acquisition) as well as converting raw TTTR data to FLIM image data stack.
+    * [[https://github.com/Fluorescence-Tools/tttrlib| tttrlib]] tttrlib is a low level, high performance API to read and process time-tagged-time resolved (TTTR) data
 ==== Data Acquisition ====
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   * **pyPL**: wxpython integration of software and hardware for micro-photoluminescence measurements: WinSpec, PicoHarp, and Thorlabs/APT piezos and stepper motors. \\  https://github.com/kaseyrussell/pyPL
   * PicoHarp Multiscan with Prior Stage: [[https://bitbucket.org/ywsong2/uky_ptu_convert]]
+  * **Python** interface to communicate with TimeHarp 260: [[https://github.com/impact27/th260]]
+  * LabView based **Fluorescence lifetime activated droplet sorting** software[[https://github.com/SadatHasan/EasyFlux]]
+  * [[https://github.com/scopefoundry/]] A Python platform for controlling custom laboratory experiments and visualizing scientific data
 ===  Demos about Controlling PicoQuant Devices ===